A package containing metadata for LAPOINTE arrays


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Documentation for package ‘LAPOINTE.db’ version 2.4.1

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LAPOINTE Bioconductor annotation data package
LAPOINTE.db Bioconductor annotation data package
LAPOINTEACCNUM Map Manufacturer identifiers to Accession Numbers
LAPOINTEALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
LAPOINTECHR Map Manufacturer IDs to Chromosomes
LAPOINTECHRLENGTHS A named vector for the length of each of the chromosomes
LAPOINTECHRLOC Map Manufacturer IDs to Chromosomal Location
LAPOINTECHRLOCEND Map Manufacturer IDs to Chromosomal Location
LAPOINTEENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
LAPOINTEENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
LAPOINTEENTREZID Map between Manufacturer Identifiers and Entrez Gene
LAPOINTEENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
LAPOINTEENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
LAPOINTEGENENAME Map between Manufacturer IDs and Genes
LAPOINTEGO Map between Manufacturer IDs and Gene Ontology (GO)
LAPOINTEGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
LAPOINTEGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
LAPOINTELOCUSID Map between Manufacturer Identifiers and Entrez Gene
LAPOINTEMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
LAPOINTEMAPCOUNTS Number of mapped keys for the maps in package LAPOINTE.db
LAPOINTEOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
LAPOINTEORGANISM The Organism information for LAPOINTE
LAPOINTEORGPKG The Organism information for LAPOINTE
LAPOINTEPATH Mappings between probe identifiers and KEGG pathway identifiers
LAPOINTEPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
LAPOINTEPFAM Map Manufacturer IDs to Pfam IDs
LAPOINTEPMID Map between Manufacturer Identifiers and PubMed Identifiers
LAPOINTEPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
LAPOINTEPROSITE Map Manufacturer IDs to PROSITE ID
LAPOINTEREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
LAPOINTESYMBOL Map between Manufacturer Identifiers and Gene Symbols
LAPOINTEUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
LAPOINTEUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
LAPOINTEUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
LAPOINTE_dbconn Collect information about the package annotation DB
LAPOINTE_dbfile Collect information about the package annotation DB
LAPOINTE_dbInfo Collect information about the package annotation DB
LAPOINTE_dbschema Collect information about the package annotation DB